Tough to say without more info. Sounds like they might be aftermarket manifolds already (most OEM are not polished).
As a general rule of thumb, most engine mods are designed to increase flow (blower, carb, intake manifold, heads, cam, etc.), therefore exhaust flow must also be addressed. However, on a relatively stock engine, decreasing exhaust restriction will not show significant gains. Through-transom exhaust is already fairy unrestrictive.
So, in my opinion, if your motor is pretty mild, through-transom exhaust is probably fine for now. When you bolt on that blower, Brodix heads, and Crane roller cam, then you might want to look at some new headers.
Have fun! http://www.goldenplasma.f2s.com/foru...es/happy34.gif