My comment was about the voltage on the batteries when partially discharged. I was concerned that a lower reference voltage might cause the fully charged battery to get over charged. But, after thinking about it a bit I see that any overcharging would be minimal if at all because the reference signal would be the same for all the batteries. just need to make sure the battery with the most discharge is used as the reference other wise it might take too long to charge that battery.
I just use a continous duty selinoid that is activated by an oil pressure safety switch. When the motor starts, the switch closes connecting the Aux batteries to the charging circuit. Sounds similar to the relay based ssytem discussed earlier in this thread.
cruzer